Decision making with decision event graphs

We introduce a new modelling representation, the Decision Event Graph (DEG), for asymmetric multistage decision problems. The DEG explicitly encodes conditional independences and has additional significant advantages over other representations of asymmetric decision problems. The colouring of edges makes it possible to identify conditional independences on decision trees, and these coloured trees serve as a basis for the construction of the DEG. We provide an efficient backward-induction algorithm for finding optimal decision rules on DEGs, and work through an example showing the efficacy of these graphs. Simplifications of the topology of a DEG admit analogues to the sufficiency principle and barren node deletion steps used with influence diagrams

Novel sputtering-technology for grain-size control

In this paper, we present a description of a novel high-rate plasma sputtering system that allows the control of grain size in sputtered films. Additionally, the system has the advantage of a better utilization of the target material (around 80% to 90%) by eliminating the race track at the target as in conventional plasma magnetron sputtering systems. The potential and capabilities of this novel plasma sputtering device are demonstrated in this paper by the deposition of a number of different Cr thin films suitable for underlayers in thin-film media and for which we have performed a systematic X-ray and TEM analysis to determine the grain-size histograms, mean grain diameters, and their relationship to the sputtering processes

Investigating E2F independent cell cycle control and tumor suppression by pRB

Cellular division is primarily controlled at the G1 to S-phase transition of the cell cycle by the retinoblastoma tumor-suppressor protein (pRB). The ability of pRB to restrict S-phase entry is primarily attributed to the repression of E2F transcription factors required to upregulate cell cycle target genes necessary for cellular division. Interestingly, while pRB is disrupted in the vast majority of human cancers, mutations typically target upstream regulators of pRB leading to inactivation through hyperphosphorylation. The rarity of direct pRB mutations suggests that the regulation of the cell cycle by pRB may involve additional mechanisms outside of E2F repression, as this could to be eliminated via point mutations. Indeed, the Rb1G/G mouse model developed by Cecchini et al., which lacks the ability to form pRB-E2F complexes, showed minimal phenotypic alterations. As described in chapter 2, pRB can stabilize p27 in the absence of pRB-E2F interaction, maintaining cell cycle control. Importantly, the loss of pRB-E2F interactions in addition to the loss of p27 leads to a defective DNA damage response, and ultimately pituitary tumor development. The minimal region of pRB necessary to elicit a cell cycle arrest is the pRB large pocket which contains 3 distinct binding surfaces. Using synthetic mutants of pRB we show that all three of these sites play a role in regulating the cell cycle both in vitro and in vivo. Finally, to understand E2F independent pRB-mediated tumor-suppression, Rb1G/G mice were intercrossed with mice harboring oncogenic KrasG12D, or deletions of p21 or p53. While KrasG12D expression induced tumorigenesis was unaffected by the Rb1G mutation, the phenotype of p53 null animals was exacerbated by the Rb1G mutation. Interestingly, the loss of p21 in Rb1G/G mice showed no tumor development despite the overlapping function with p27. While it is unclear why there is a discrepancy in phenotype between Rb1G/G mice lacking p21 and those lacking p27, p27 has non-canonical functions which may be contributing to tumor development. Taken together this work describes E2F independent functions of pRB in cell cycle control and tumor suppression and provides a rationale for the unusual disruption of pRB in human cancers by hyperphosphorylation

Growth rate effects in soft CoFe films

We report on growth rate effects in sputter-deposited CoFe films prepared using high target utilization sputtering technology (HiTUS). We find that the grain structure of these polycrystalline films is closely related to the growth rate. By changing the growth rate, samples were prepared with different grain structure, which in turn had the effect of changing the magnetic properties of the films. We demonstrate control of the coercivity, which varied by a factor of more than ten. This was achieved via grain size control in CoFe films of thickness 20 nm. Furthermore, by employing a two-step sputtering process, in which two extreme growth rates are used sequentially, we were able to tune the saturation magnetization

Effect of blade geometry on the aerodynamic loads produced by vertical-axis wind turbines

Accurate aerodynamic modelling of vertical-axis wind turbines poses a significant challenge. The rotation of the turbine induces large variations in the angle of attack of its blades that can manifest as dynamic stall. In addition, interactions between the blades of the turbine and the wake that they produce can result in impulsive changes to the aerodynamic loading. The Vorticity Transport Model has been used to simulate the aerodynamic performance and wake dynamics of three different vertical-axis wind turbine configurations. It is known that vertical-axis turbines with either straight or curved blades deliver torque to their shaft that fluctuates at the blade passage frequency of the rotor. In contrast, a turbine with helically twisted blades delivers a relatively steady torque to the shaft. In this article, the interactions between helically twisted blades and the vortices within their wake are shown to result in localized perturbations to the aerodynamic loading on the rotor that can disrupt the otherwise relatively smooth power output that is predicted by simplistic aerodynamic tools that do not model the wake to sufficient fidelity. Furthermore, vertical-axis wind turbines with curved blades are shown to be somewhat more susceptible to local dynamic stall than turbines with straight blades

Effect of dynamic stall on the aerodynamics of vertical-axis wind turbines

Accurate simulations of the aerodynamic performance of vertical-axis wind turbines pose a significant challenge for computational fluid dynamics methods. The aerodynamic interaction between the blades of the rotor and the wake that is produced by the blades requires a high-fidelity representation of the convection of vorticity within the wake. In addition, the cyclic motion of the blades induces large variations in the angle of attack on the blades that can manifest as dynamic stall. The present paper describes the application of a numerical model that is based on the vorticity transport formulation of the Navier–Stokes equations, to the prediction of the aerodynamics of a verticalaxis wind turbine that consists of three curved rotor blades that are twisted helically around the rotational axis of the rotor. The predicted variation of the power coefficient with tip speed ratio compares very favorably with experimental measurements. It is demonstrated that helical blade twist reduces the oscillation of the power coefficient that is an inherent feature of turbines with non-twisted blade configurations

The mechanisms responsible for 2-dimensional pattern formation in bacterial macrofiber populations grown on solid surfaces: fiber joining and the creation of exclusion zones

BACKGROUND: When Bacillus subtilis is cultured in a complex fluid medium under conditions where cell separation is suppressed, populations of multicellular macrofibers arise that mature into ball-like structures. The final sedentary forms are found distributed in patterns on the floor of the growth chamber although individual cells have no flagellar-driven motility. The nature of the patterns and their mode of formation are described in this communication. RESULTS: Time-lapse video films reveal that fiber-fiber contact in high density populations of macrofibers resulted in their joining either by entwining or supercoiling. Joining led to the production of aggregate structures that eventually contained all of the fibers located in an initial area. Fibers were brought into contact by convection currents and motions associated with macrofiber self-assembly such as walking, pivoting and supercoiling. Large sedentary aggregate structures cleared surrounding areas of other structures by dragging them into the aggregate using supercoiling of extended fibers to power dragging. The spatial distribution of aggregate structures in 6 mature patterns containing a total of 637 structures was compared to that expected in random theoretical populations of the same size distributed in the same surface area. Observed and expected patterns differ significantly. The distances separating all nearest neighbors from one another in observed populations were also measured. The average distance obtained from 1451 measurements involving 519 structures was 0.73 cm. These spacings were achieved without the use of flagella or other conventional bacterial motility mechanisms. A simple mathematical model based upon joining of all structures within an area defined by the minimum observed distance between structures in populations explains the observed distributions very well. CONCLUSIONS: Bacterial macrofibers are capable of colonizing a solid surface by forming large multicellular aggregate structures that are distributed in unique two-dimensional patterns. Cell growth geometry governs in an hierarchical way the formation of these patterns using forces associated with twisting and supercoiling to drive motions and the joining of structures together. Joining by entwining, supercoiling or dragging all require cell growth in a multicellular form, and all result in tightly fused aggregate structures

The management of tetanus in adults in an intensive care unit in Southern Vietnam

Background: Tetanus remains common in many low- and middle-income countries (LMICs) yet the evidence base guiding management of this disease is extremely limited, particularly with respect to contemporary management options. Sharing knowledge about practice may facilitate improvement in outcomes elsewhere. Methods: We describe clinical interventions and outcomes of 180 adult patients ≥16 years-old with tetanus enrolled in prospective observational studies at a specialist infectious diseases hospital in Southern Vietnam. Patients were treated according to a holistic management protocol encompassing wound-care, antitoxin, antibiotics, symptom control, airway management, nutrition and de-escalation criteria. Results: Mortality rate in our cohort was 2.8%, with 90 (50%) patients requiring mechanical ventilation for a median 16 [IQR 12-24] days. Median [IQR] duration of ICU stay was 15 [8-23] days. Autonomic nervous system dysfunction occurred in 45 (25%) patients. Hospital acquired infections occurred in 77 (43%) of patients. Conclusion: We report favourable outcomes for patients with tetanus in a single centre LMIC ICU, treated according to a holistic protocol. Nevertheless, many patients required prolonged intensive care support and hospital acquired infections were common